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LIS - Legume Information System
Information about legume traits for crop improvement
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Species
Aeschynomene evenia
Apios americana
Arachis hypogaea
Arachis duranensis
Arachis ipaensis
Cajanus cajan
Chamaecrista fasciculata
Cicer arietinum
----Genome-wide views of genetic variants (SNPs) between chickpea accessions
Glycine max
----Genome-wide views of genetic variants (SNPs) between soybean accessions
Lens culinaris
Lotus japonicus
Lupinus albus
Lupinus angustifolius
Medicago sativa
Medicago truncatula
Phaseolus acutifolius
Phaseolus lunatus
Phaseolus vulgaris
----Genome-wide views of genetic variants (SNPs) between bean accessions
Pisum sativum
Trifolium pratense
Trifolium repens
Vicia faba
Vigna angularis
Vigna radiata
Vigna unguiculata
Genome-wide views of genetic variants (SNPs) between chickpea accessions
Genomes
Traits & Maps
Germplasm
Search
Annotate your sequences
BLAT
BLAST
BioProjects at NCBI
Keyword search
Gene families
Gene search and "basket" (sets of genes)
Maps
Markers
Protein domains
Publications (for data at LIS)
Publications (recent literature)
QTL
SequenceServer
Download
Submit Data
Community
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A collaborative, community resource to facilitate crop improvement by integrating genetic, genomic, and trait data across legume species.
(
Cite LIS
)
Dash S, Campbell JD, Cannon EK, Cleary AM, Huang W, Kalberer SR, Karingula V, Rice AG, Singh J, Umale PE, Weeks NT, Wilkey AP, Farmer AD, Cannon SB. 2015. Legume information system (LegumeInfo. org): a key component of a set of federated data resources for the legume family.
Nucl. Acids Res. (2016) 44:D1181-D1188
(doi: 10.1093/nar/gkv1159).
(
Cited by
)
Past publication
:
Gonzales MD, Archuleta E, Farmer A, Gajendran K, Grant D, Shoemaker R, Beavis WD, Waugh ME. The Legume Information System (LIS): an integrated information resource for comparative legume biology.
Nucleic Acids Res. (2005) 33:D660-665
(doi: 10.1093/nar/gki128).
Browse and Search
Gene Families
Maps
QTL Search
Gene Search
Protein Domains
Context Viewer
Data Store
Legume Mines
Legume Federation
DSCensor
Data Overviews
Expression
ZZBrowse
GWAS/QTL
Search sequences and features against sequence databases
BLAST
Sequence Search
BLAT
Sequence Search
Keyword
Search
SequenceServer
Annotate
Your Sequences
Browse genomes
Adzuki bean (3.0)
Chickpea (Kabuli)
Chickpea (Desi)
Common bean (2.0)
Cowpea (1.0)
Lima bean
Lotus (3.0)
Lupin, narrow-leafed (1.0)
Lupin, white
Medicago (4.0)
Mungbean
Pea (1.0)
Pigeonpea
Red clover (2.0)
Soybean
(SoyBase)
Tepary bean
Arachis duranensis
(PeanutBase)
Arachis ipaensis
(PeanutBase)
Arachis hypogaea
(PeanutBase)
Click for more about the Legume Information System (LIS) and sister projects ...
Welcome to LIS - the Legume Information System
LIS contains agronomically useful information in legume species, including genome sequences, genetic maps, genes, gene families, and mapped traits. The "legumeinfo" site makes use of several open-source projects (Tripal, Chado, GBrowse, JBrowse, and many others -- see
GitHub legumeinfo
and
GitHub LegumeFederation
), facilitating more efficient collaboration with other research groups using and developing these tools (e.g.
PeanutBase
,
knowpulse
and
coolseasonfoodlegume
).
Let us know
if you have questions, requests, or data to contribute.
Funded by the USDA-ARS. Developed and hosted by the National Center for Genome Resources (NCGR) and the USDA-ARS SoyBase and Legume Clade Database group at Ames, IA, with the help of many other researchers.
NEWS
Oct 2021 update: tepary bean genomes
Feb 2021 update: new genomes for Aeschynomene evenia and Medicago sativa
Nov 2020 update: new tools for GWAS, expression, BLAST and Data Store Overviews!
ANNOUNCEMENTS
2 - 4 November 2021
:
BIC & NAPIA Biennial meeting
, Virtual Meeting
8 - 12 January 2022
:
International Plant & Animal Genome XXIX
, San Diego, CA, USA
May 2022
:
International Food Legume Research Conference (IFLRC-VIII)
Nairobi, Africa
October 2022
:
International Legume Society (ILS4)
Granada, Spain